Data Access
Databases for archiving and dissemination of EFI data are under development. We appreciate your patience as we refine these resources to better enable interrogation by the scientific community.
Bioinformatic Data
- SFLD - Structure Function Linkage Database, a database of highly curated and explicit sequence and genome context information for the superfamilies under study by the EFI as well as other enzyme superfamilies. The SFLD was created in the Babbitt Laboratory with the resources and aid of the UCSF Resource for Biocomputing, Visualization, and Informatics (RBVI).
Start here with the SFLD Tutorials or jump to SFLD data for a specific superfamily AH | EN | GST | HAD | IS
Experimental Data
- EFI-DB – a public database of EFI determined experimental data
Start here with the EFI-DB Tutorial or jump to EFI-DB data for a specific superfamily AH | EN | GST | HAD | IS
Find an Enzyme
- Find an EFI-targeted enzyme and it’s associated experimental data
Search in the EFI-DB by ID (Jump to Target) or by amino acid sequence (FASTA search)
- Find an enzyme and it’s associated bioinformatic data
Search by in the SFLD by name, ID, or amino acid sequence
Need help finding an enzyme? See EFI-QuickHelps
Other databases in which we deposit target information as it becomes available:
- PSI KnowledgeBase – a continually updated portal to research data and other resources primarily from the PSI
- TargetDB – a target registration database, providing information on the experimental progress and status of targets primarily from PSI centers
- PepcDB - Protein expression purification and crystallization DataBase, providing target and protocol information contributed primarily by PSI centers
- PDB - Protein Data Bank, a worldwide repository of information about the 3D structures of large biological molecules
- PSI-MR, PSI materials repository, maintains and distributes protein expression plasmids and vectors created primarily by the PSI centers
